PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g33170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 357aa    MW: 39701.2 Da    PI: 6.4174
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g33170genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07122142526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C++f++ G C+ Gd C F+Hg
  Tp3g33170 122 ACPDFRK-GSCSKGDACEFSHG 142
                7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3118144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4121144IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5122142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001149180IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568152176IPR000571Zinc finger, CCCH-type
SMARTSM003560.53152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMIGETHRVY PTVHIPPWPL SDDLTAADIY GSPDGGNTTI EALAALQRYL PSNEPDPDSD  60
PDLSGPDSPI DAYSCDHFRM YEFKVRRCAR GRSHDWTECP YAHPGEKARR RDPRKYHYSG  120
TACPDFRKGS CSKGDACEFS HGVFECWLHP ARYRTQPCKD GGNCRRRVCF FAHSPDQLRV  180
LPNQSPDRVD SFDGMSPIRR AFQFSISPSS GSPPVSPRAD SESSSLLSRS LGSGSVNDVV  240
ASLRNLQLNK VKSLPSSYNN QIRCYGSGFG SPRGSVLGPG FRSLPNTPTR PEIGYMDIWD  300
NGLEEEPAME RVESGRELRA KMFEKLSKEN CADRVDPDPY QSPGEAPDVG WVSELVM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531430.0AK353143.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743556.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
RefseqXP_013743557.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotO821990.0C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLV4MCX50.0V4MCX5_EUTSA; Uncharacterized protein
STRINGBra039022.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.10.0C3H family protein